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BMDB nightly: four models give different results run to run, and BIOMD0000000613's is not numerical

Status: Open.

#2077 In virtualcell/vcell;

· jcschaff opened on Sep 8, 2026

SpringSaLaD: the reserved Anchor site defaults to DARK_GRAY, which is nearly invisible in the trajectory viewer

Status: Open.

#2072 In virtualcell/vcell;

· jcschaff opened on Sep 7, 2026

SpringSaLaD: auto-generated _tot observables land in the wrong structure, and there is no way to move one

Status: Open.

#2071 In virtualcell/vcell;

· jcschaff opened on Sep 7, 2026

SpringSaLaD: exporting an application with no reactions reports success and writes a 0-byte file

Status: Open.

#2070 In virtualcell/vcell;

· jcschaff opened on Sep 7, 2026

Two reference guides on vcell.org have gone stale: six statements no longer match the client

User Materials

Status: Open.

#2069 In virtualcell/vcell;

· jcschaff opened on Sep 7, 2026

Reaction rules can only be built in the graphics editor: no textual route, and the BNGL column is read-only for rules

Java-basedPull requests that update Java codePull requests that update Java code

To Discuss

To Refineissue is either too large in scope or undefinedissue is either too large in scope or undefined

Type: enhancementenhance existing featureenhance existing feature

User Interface

Status: Open.

#2068 In virtualcell/vcell;

· jcschaff opened on Sep 7, 2026

Release script should refuse to tag a version with no CHANGELOG section

Status: Open.

#2058 In virtualcell/vcell;

· jcschaff opened on Sep 3, 2026

VCell would really benefit from better PropertyChange infrastructure

Status: Open.

#2056 In virtualcell/vcell;

· CodeByDrescher opened on Sep 3, 2026

Simulation submission stops on prod AND dev when the shared SLURM controller gets slow

Status: Open.

#2053 In virtualcell/vcell;

· jcschaff opened on Sep 3, 2026

SBML import renames colliding user parameters to param_<id>, and the overrides filter then hides them

Status: Open.

#2044 In virtualcell/vcell;

· jcschaff opened on Sep 1, 2026

DependencyConvergence swallows the real resolution error, and it misdirects diagnosis

Status: Open.

#2038 In virtualcell/vcell;

· jcschaff opened on Aug 28, 2026

Auth0 does not validate email addresses for non-social logins; VCell never checks the email_verified claim

Java-basedPull requests that update Java codePull requests that update Java code

Security

Status: Open.

#2035 In virtualcell/vcell;

· jcschaff opened on Aug 26, 2026