Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
FidlTrack platform for improved single-particle tracking fidelity
Mammary cell shape computation over time with Trackmate-Cellpose
Open Call #1: Murine Skeletal Muscle Analysis
Research project to track movement of Hepatoceullar Carcinoma cells.
End-to-end pipeline for bacterial single-cell lineage, growth, and morphology analysis from TrackMate exports with publication-ready plots (Colab-friendly).
FijiTools2020 is a collection of tools designed for use in ImageJ/Fiji. The code was written for the analysis of microscopy images in the lab of Mikael Sellin, Uppsala University. Some of the scripts are meant to work in conjunction with a separately performed Trackmate analysis.
Analysis software for the CAMP cell-motility study
Open Call #1: Segmentation and Tracking of Epithelial Cells
Fiji/ImageJ plugin for StarDist-based 3D object counting, measurement, maps, and batch processing.
🔍 Analyze bacterial lineage, growth, and morphology with an automated pipeline for insightful, publication-ready results from TrackMate exports.
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