Modular Agent Based Evolution Framework
Python phylogeny tracker for in silico evolution experiments
Artificial life in the browser: organisms evolve genomes, brains, memory and communication. Nothing about their behaviour is scripted.
Dyadic Framework
Digital evolution model dedicated to bacterial in silico experimental evolution.
Computational model of laboratory directed evolution + experiments.
We use digital evolution to investigate the evolutionary consequences of phenotypic plasticity.
Source for our manuscript, "Adaptive phenotypic plasticity stabilizes evolution in fluctuating environments"
CodonTrace Genesis — deterministic research software for digital evolution, causal mechanism auditing, replayable ALife experiments, and evidence-gated AI/evolution studies.
A collection of work investigating the potentiation of associative learning in digital organisms
A Red Queen-style symmetric melee evolution sandbox: grid-world agent-based simulation that faithfully records full time-series data for others to learn selection operators from; a pure data recorder with no built-in learner and no hand-written fitness
Faithful implementations of 15 classic artificial-life systems + a five-family battery of emergent-complexity measures.
A digital evolution system and library
A digital evolution soup built as an archaeology site: self-replicating machine code, and the instruments to work out what it became.
A prokaryotic architecture for LLM agent ecosystems: horizontal capability transfer with an immune system, dormancy that costs nothing, and epidemiological measurement of how agent capabilities actually spread.
Digital evolution research on the substrate constraints that determine what selection can express
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