bio-computing

Tokenizer for encoding/decoding dna sequences

This is a stochastic simulator for DNA chemcial reaction networks developed primarly by Marceline Sorensen, based on the idea of Marc Riedel's Alea simulator. It's a complete rewrite in rust aiming to implement better detection of stable state end conditions, user friendly input file syntax, and multithreaded execution.

A high-performance Python implementation of Dawkin's Weasel experiment. Uses multiprocessing and matplotlib to visualise how different mutation rates affect evolutionary convergence speed.

"An open-source library bridging biology and software engineering. Translating nature's 3.8 billion years of R&D into ready-to-use algorithms for optimization, generative design, and distributed systems."

Open operating-system specification for biological neural networks — cortical organoids, MEA-coupled cultures, and their in-silico emulators. v0.1 draft with working L0 reference emulator (Izhikevich + Hodgkin-Huxley + STDP + migration).

Mercy Cube v1.0 — Open, Real, Ready Stackable, 7-watt, offline Grok shard. 2025 physics, no hype.

An interactive simulation environment for cultivating biological neural networks, studying organoid intelligence, and testing organoid-AI closed-loop learning.

A synthetic biology computing framework and structural logic compiler transforming E. coli DNA arrays into addressable, non-volatile CRISPRi-clamped storage registers.

Cadre unifié traitant le Quorum Sensing biologique comme une transition de phase contrôlée par la densité via la physique de la matière active et la théorie MIPS.

Architecture informatique post-silicium fusionnant l'intelligence distribuée du mycélium, la frustration géométrique des verres de spin et les modèles de sécurité "zombie" inspirés de l'Ophiocordyceps pour créer des réseaux auto-cicatrisants et résilients