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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 41 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 26 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 694 repositories
  • GIAnT-Python Public

    Glutamate Imaging Analysis Toolbox, Python implementation

    AllenNeuralDynamics/GIAnT-Python's past year of commit activity
    Python 0 MIT 0 0 2 Updated Sep 9, 2026
  • Aind.Behavior.VrForaging.Packaging Public

    A repository to package primary data from Aind.Behavior.VrForaging

    AllenNeuralDynamics/Aind.Behavior.VrForaging.Packaging's past year of commit activity
    Python 0 MIT 0 4 3 Updated Sep 9, 2026
  • AllenNeuralDynamics/breathing-codabench-challenge's past year of commit activity
    Python 0 0 1 0 Updated Sep 9, 2026
  • zombie Public
    AllenNeuralDynamics/zombie's past year of commit activity
    JavaScript 0 MIT 1 10 0 Updated Sep 9, 2026
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging's past year of commit activity
    C# 3 MIT 0 8 1 Updated Sep 9, 2026
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher's past year of commit activity
    Python 0 MIT 1 20 5 Updated Sep 9, 2026
  • aind-pophys-pipeline Public

    2P planar optical physiology processing pipeline

    AllenNeuralDynamics/aind-pophys-pipeline's past year of commit activity
    Nextflow 0 MIT 0 5 0 Updated Sep 9, 2026
  • harp.core.pico Public Forked from harp-tech/core.pico

    A Harp core implementation on the RP2040

    AllenNeuralDynamics/harp.core.pico's past year of commit activity
    C++ 0 MIT 3 2 1 Updated Sep 9, 2026
  • dynamic-foraging-processing Public

    A library for processing dynamic foraging behavior data acquired on the new acquisition standard

    AllenNeuralDynamics/dynamic-foraging-processing's past year of commit activity
    Python 0 MIT 0 7 5 Updated Sep 9, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging's past year of commit activity
    C# 0 MIT 0 19 6 Updated Sep 9, 2026